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Structural features of a 3' splice site influenza A: 11-nt hairpin
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.0 mM RNA (11-MER) 95% H2O/5% D2O 101.12 6.0 ambient atm 275.15 2 2D 1H-1H NOESY 1.0 mM RNA (11-MER) 95% H2O/5% D2O 101.12 6.0 ambient atm 272.15 3 2D 1H-1H NOESY 4.0 mM RNA (11-MER) 100% D2O 101.12 6.0 ambient atm 293.15 4 2D 1H-1H NOESY 4.0 mM RNA (11-MER) 100% D2O 101.12 6.0 ambient atm 271.15 5 2D 1H-1H TOCSY 4.0 mM RNA (11-MER) 100% D2O 101.12 6.0 ambient atm 293.15 6 2D 1H-1H TOCSY 4.0 mM RNA (11-MER) 100% D2O 101.12 6.0 ambient atm 271.15 7 2D 1H-31P HETCOR 4.0 mM RNA (11-MER) 100% D2O 101.12 6.0 ambient atm 293.15
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Varian INOVA 500
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria lowest NOE restraint violation energy Conformers Calculated Total Number 20 Conformers Submitted Total Number 20 Representative Model 1 (lowest noe restraint violation energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 chemical shift assignment Sparky Goddard 3 peak picking Sparky Goddard 4 data analysis Sparky Goddard 5 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 6 collection VNMR Varian