2MVV
Solution Structure of the 5-phenyl-3-oxo-pentyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
2 | 3D CBCA(CO)NH | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
3 | 3D C(CO)NH | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
4 | 3D HNCO | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
5 | 3D HNCA | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
6 | 3D HNCACB | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
7 | 3D 1H-13C NOESY | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
8 | 3D 1H-15N TOCSY | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
9 | 3D H(CCO)NH | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
10 | 3D HCCH-TOCSY | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
11 | 3D 1H-15N NOESY | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 | |
12 | 3D HNHA | 1-2 mM [U-98% 13C; U-98% 15N] protein, 20 mM potassium phosphate | 95% H2O/5% D2O | 20 | 5.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Agilent | UNITY | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | LOWEST ENERGY STRUCTURES WERE FURTHER REFINED IN EXPLICIT WATER USING THE RECOORD PROTOCOL | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
2 | chemical shift assignment | Analysis | v1.15 | CCPN |
3 | data analysis | Analysis | v1.15 | CCPN |
4 | peak picking | Analysis | v1.15 | CCPN |
5 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
6 | structure solution | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
7 | collection | VNMR | Varian | |
8 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
9 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
10 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax |