2MVI
Structure of the S-glycosylated bacteriocin ASM1
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
2 | 2D 1H-13C HSQC | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
3 | 2D 1H-13C HMBC | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
4 | 2D 1H-1H TOCSY | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
5 | 2D 1H-15N-HSQC-TOCSY | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
6 | 2D 1H-13C-HSQC-TOCSY | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
7 | 2D 1H-13C-H2BC | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 | |||
8 | 2D 1H-1H NOESY | 1 mM protein | 38% d3-acetonitrile, 56.8% water, 0.2% d-acetic acid, 5% D2O | ambient | 310 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | NMRPipe | 2011.118.08.55 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | processing | KUJIRA | 0.9843 | Naohiro Kobayashi |
4 | processing | NMRView | Johnson, One Moon Scientific | |
5 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
6 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |