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The solution structure of the MANEC-type domain from Hepatocyte Growth Factor Inhibitor 1 reveals an unexpected PAN/apple domain-type fold
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310 2 2D 1H-13C HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310 3 3D CBCA(CO)NH 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310 4 3D HNCACB 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310 5 3D HNCO 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310 6 3D HNCA 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310 7 4D HabCab(CO)NH 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 8 4D HCCH-TOCSY 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 9 2D (HB)CB(CGCD)HD 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 10 2D (HB)CB(CGCDCE)HE 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 11 3D HBCB(CGCD)HD 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 12 3D HBCB(CGCDCE)HE 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 13 3D 13C-edited NOESY HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 14 4D 13Cali,13Caro-edited HMQC-NOESY-HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 15 4D 13Cali,13Cali-edited HMQC-NOESY-HMQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 16 4D 15N,13C edited HMQC-NOESY-HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 17 2D 1H-15N HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 18 2D 1H-13C HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 19 3D 1H-15N NOESY 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 298 20 2D 1H-15N HSQC 1 mM [U-99% 13C; U-99% 15N] protein_1 93% H2O/7% D2O 100 6.5 ambient 310
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker Plus 500 2 Agilent DDR2 600 3 Agilent DDR2 800
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing CYANA
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment Sparky Goddard 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 refinement YASARA2 YASARA2-Krieger 5 processing SSA_software_package Stanek, Kosinski, Kozminski