2MPZ | pdb_00002mpz

Atomic model of the Abeta D23N "Iowa" mutant using solid-state NMR, EM and Rosetta modeling

SOLID-STATE NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 13C/13C spin diffusion	25 uM [U-99% 13C; U-99% 15N] Abeta D23N, solid		10	7.4	ambient	298
2	1D 13C PITHIRDs	25 uM [U-99% 13C; U-99% 15N] Abeta D23N, solid		10	7.4	ambient	298
3	1D 13C/15N REDOR	25 uM [U-99% 13C; U-99% 15N] Abeta D23N, solid		10	7.4	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	400
2	Bruker	AVANCE	600

NMR Refinement
Method	Details	Software
Rosetta refinement	RESIDUES 1-14 WERE HIGHLY DYNAMIC BASED ON SEPARATE SOLID-STATE NMR EXPERIMENTS AND WERE NOT INCLUDED IN THE FINAL MODELS	Rosetta

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	10000
Conformers Submitted Total Number	5
Representative Model	1 (lowest energy)

Additional NMR Experimental Information
Details	WHILE INFORMATION FROM STEM MASS-PER-LENGTH MEASUREMENTS WAS USED TO ESTABLISH THE OVERALL 3-FOLD SYMMETRY OF THE SYSTEM, NO DETAILED EM MAP DENSITY WAS USED IN STRUCTURE REFINEMENT. THE REFINEMENT WAS BASED PRIMARILY ON THE SOLID-STATE NMR DATA

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	geometry optimization	Rosetta		Sgourakis and Baker
2	structure solution	Rosetta		Sgourakis and Baker
3	refinement	Rosetta		Sgourakis and Baker
4	refinement	CS-ROSETTA