2MOF | pdb_00002mof

Structural insights of TM domain of LAMP-2A in DPC micelles

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.6 mM [U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
2	3D HNCO	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
3	3D HNCA	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
4	3D HN(CO)CA	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
5	3D CBCA(CO)NH	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
6	3D HNCACB	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
7	3D 1H-15N NOESY	0.6 mM [U-99% 15N] TM domain of LAMP2A	90% H2O/10% D2O	25	6.3	ambient	310
8	4D HCCH NOESY	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	100% D2O	25	6.3	ambient	310
9	3D 13C Filter NOESY	0.6 mM [U-99% 13C; U-99% 15N] TM domain of LAMP2A	100% D2O	25	6.3	ambient	310

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	800
3	Bruker	AVANCE	900

NMR Refinement
Method	Details	Software
simulated annealing, torsion angle dynamics		TopSpin

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin		Bruker Biospin
2	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	data analysis	PIPP		Garrett
4	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore