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Recognition complex of DNA d(CGACGCGTCG)2 with thiazotropsin B
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298 2 2D 1H-1H COSY 2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298 3 2D 1H-1H NOESY 2 mM Thiazotropsin B, 2 mM 5'-D(*CP*GP*AP*CP*GP*CP*GP*TP*CP*G)-3' 90% H2O/10% D2O 0.05 7.4 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1 Conformers Submitted Total Number 1 Representative Model 1 (minimized average structure)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing TopSpin 2.1 Bruker Biospin 3 chemical shift assignment Sparky Goddard 4 data analysis Sparky Goddard 5 peak picking Sparky Goddard 6 geometry optimization SYBYL Tripos 7 geometry optimization Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 8 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 9 structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman 10 structure solution MARDIGRAS Tripos