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Ginsentides: Characterization, Structure and Application of a New Class of Highly Stable Cystine Knot Peptides in Ginseng
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 95 % H2O-1, 5 % D2O-2 95% H2O/5% D2O 0 3.3 ambient 298 2 2D 1H-1H NOESY 95 % H2O-1, 5 % D2O-2 95% H2O/5% D2O 0 3.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 refinement CYANA Guntert, Mumenthaler and Wuthrich 6 chemical shift assignment NMRspy Zheng Yu, Xu Yingqi and Yang Daiwen 7 peak picking NMRspy Zheng Yu, Xu Yingqi and Yang Daiwen 8 refinement ProcheckNMR Laskowski and MacArthur 9 geometry optimization MOLMOL Koradi, Billeter and Wuthrich