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Solution structure of CDYL2 chromodomain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 2 2D 1H-13C HSQC 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 3 3D HNCO 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 4 3D HNCA 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 5 3D CBCA(CO)NH 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 6 3D HBHA(CO)NH 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 7 3D 1H-15N NOESY 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 8 3D HCCH-TOCSY 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 9 3D 1H-13C NOESY 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298 10 3D HCCH-TOCSY 20 mM TRIS, 150 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 0.15 7.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 chemical shift assignment Sparky Goddard 5 data analysis TALOS Cornilescu, Delaglio and Bax 6 structure solution CYANA Guntert, Mumenthaler and Wuthrich 7 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 8 chemical shift assignment FMCGUI 2.5 Lemak A. 9 data analysis FMCGUI 2.5 Lemak A.