2MHD
NMR structure of the protein BACUNI_03114 from Bacteroides uniformis ATCC 8492
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
2 | 4D HACANH APSY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
3 | 5D HACACONH APSY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
4 | 5D CBCACONH APSY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
5 | 3D 1H-15N NOESY | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
6 | 3D 1H-13C NOESY aliphatic | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 | |
7 | 3D 1H-13C NOESY aromatic | 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide, 1.2 mM [U-99% 13C; U-99% 15N] protein | 95% H2O/5% D2O | 0.0798 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 19 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | TopSpin | 2.1 | Bruker Biospin |
3 | data analysis | TopSpin | 2.1 | Bruker Biospin |
4 | collection | TopSpin | 2.1 | Bartels et al. |
5 | processing | TopSpin | 2.1 | Bartels et al. |
6 | data analysis | TopSpin | 2.1 | Bartels et al. |
7 | collection | TopSpin | 2.1 | Bruker Biospin |
8 | processing | TopSpin | 2.1 | Bruker Biospin |
9 | data analysis | TopSpin | 2.1 | Bruker Biospin |
10 | collection | TopSpin | 2.1 | Bartels et al. |
11 | processing | TopSpin | 2.1 | Bartels et al. |
12 | data analysis | TopSpin | 2.1 | Bartels et al. |
13 | chemical shift assignment | CARA | Keller and Wuthrich | |
14 | data analysis | CARA | Keller and Wuthrich | |
15 | peak picking | CARA | Keller and Wuthrich | |
16 | chemical shift assignment | j-UNIO | Herrmann, Guntert and Wuthrich | |
17 | peak picking | j-UNIO | Herrmann, Guntert and Wuthrich | |
18 | structure solution | j-UNIO | Herrmann, Guntert and Wuthrich | |
19 | refinement | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich | |
20 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |