☰ Navigation Tabs
Solution structure of the ims domain of the mitochondrial import protein TIM21 from S. cerevisiae
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 2 2D 1H-13C HSQC aliphatic 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 3 2D 1H-13C HSQC aromatic 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 4 3D HNCO 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 5 3D HNCA 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 6 3D HNCACB 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 7 3D CBCA(CO)NH 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 8 3D HCCH-TOCSY 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 9 3D 1H-15N NOESY 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 10 3D 1H-13C NOESY aliphatic 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298 11 3D 1H-13C NOESY aromatic 0.3-0.8 mM [U-100% 13C; U-100% 15N] entity, 50 mM sodium chloride, 20 mM HEPES 90% H2O/10% D2O 7.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 700 2 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing refinement in explicit solvent Sparky
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment Sparky Goddard 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 peak picking CYANA Guntert, Mumenthaler and Wuthrich 4 structure solution CYANA Guntert, Mumenthaler and Wuthrich 5 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore