Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
HIV-1 gp41 clade C Membrane Proximal External Region peptide in DPC micelle
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D HNCO,HNCA,HN(CA)CB,HN(COCA)CB,HN(CO)CA,HN(CA)CO
1 mM [U-100% 13C; U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC
90% H2O/10% D2O
0
6.6
ambient
308
2
3D C(CO)NH,H(CCO)NH,HCCH-TOCSY
1 mM [U-100% 13C; U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC
90% H2O/10% D2O
0
6.6
ambient
308
3
3D 1H-13C NOESY
1 mM [U-100% 13C; U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC
90% H2O/10% D2O
0
6.6
ambient
308
4
3D 1H-15N NOESY
1 mM [U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC
90% H2O/10% D2O
0
6.6
ambient
308
5
3D HNHA
1 mM [U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC
90% H2O/10% D2O
0
6.6
ambient
308
6
2D 1H-1H NOESY,TOCSY
1 mM MPER-PB7, 100 mM [U-100% 2H] DPC
100% D2O
0
6.6
ambient
308
7
Q-J RDC
1 mM [U-100% 13C; U-100% 15N] MPER-PB7, 100 mM [U-100% 2H] DPC, 20 mg/mL DNA nanotube
90% H2O/10% D2O
0
6.6
ambient
308
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
800
2
Bruker
AVANCE
750
3
Bruker
AVANCE
600
4
Varian
INOVA
600
NMR Refinement
Method
Details
Software
simulated annealing
Structure models were calculated using TENSO module incorporating RDC restraints during the high temperature torsion angle dynamics annealing stage, and planeDisPot module incorporating EPR depth restraints during the subsequent low temperature Cartesian coordinate dynamics annealing stage.
NMRPipe
NMR Ensemble Information
Conformer Selection Criteria
target function
Conformers Calculated Total Number
20
Conformers Submitted Total Number
10
Representative Model
1 (closest to the average)
Additional NMR Experimental Information
Details
MODELS SUPERIMPOSED FROM RESIDUE 666 TO RESIDUE 672.