2MDL
Structure and NMR assignments of Scylla Serrata anti lipopolysaccharide Factor-24 (SsALF-24)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1 | 93% H2O/7% D2O | 7 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1 | 93% H2O/7% D2O | 7 | ambient | 298 | ||
3 | 2D DQF-COSY | 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1 | 93% H2O/7% D2O | 7 | ambient | 298 | ||
4 | 2D 1H-1H COSY | 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1 | 93% H2O/7% D2O | 7 | ambient | 298 | ||
5 | 2D 1H-1H NOESY | 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1 | 93% H2O/7% D2O | 7 | ambient | 298 | ||
6 | 2D 1H-1H TOCSY | 0.5 mM Scylla Serrata anti lipopolysaccharide Factor-1 | 93% H2O/7% D2O | 7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | Avance | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TOPSPIN |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TOPSPIN | Bruker Biospin | |
2 | processing | TOPSPIN | Bruker Biospin | |
3 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
4 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | chemical shift assignment | CCPNMR | CCPN | |
6 | data analysis | CCPNMR | CCPN | |
7 | peak picking | CCPNMR | CCPN |