2MAS

PURINE NUCLEOSIDE HYDROLASE WITH A TRANSITION STATE INHIBITOR


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1MASUNLIGANDED IU-NH (PDB CODE 1MAS), WATERS AND IONS REMOVED

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.51.8 M AMMONIUM SULFATE, 3% ISOPROPANOL, pH 7.5
Crystal Properties
Matthews coefficientSolvent content
3.5865

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.63α = 90
b = 159.76β = 90
c = 206.38γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray293AREA DETECTORSIEMENS1995-10-16M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.575.12.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTUNLIGANDED IU-NH (PDB CODE 1MAS), WATERS AND IONS REMOVED2.373166611880.80.2050.2050.234SHELLS29.1
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
x_mcangle_it2.61
x_scangle_it2.61
x_mcbond_it2.46
x_scbond_it2.46
x_angle_deg1.8
x_improper_angle_d1.6
x_bond_d0.011
x_bond_d_na
x_bond_d_prot
x_angle_d
RMS Deviations
KeyRefinement Restraint Deviation
x_mcangle_it2.61
x_scangle_it2.61
x_mcbond_it2.46
x_scbond_it2.46
x_angle_deg1.8
x_improper_angle_d1.6
x_bond_d0.011
x_bond_d_na
x_bond_d_prot
x_angle_d
x_angle_d_na
x_angle_d_prot
x_angle_deg_na
x_angle_deg_prot
x_dihedral_angle_d
x_dihedral_angle_d_na
x_dihedral_angle_d_prot
x_improper_angle_d_na
x_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9560
Nucleic Acid Atoms
Solvent Atoms158
Heterogen Atoms72

Software

Software
Software NamePurpose
X-PLORmodel building
X-PLORrefinement
SAINTdata reduction
SAINTdata scaling
X-PLORphasing