Alfa-actinin from parasite Entamoeba histolytica
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC/HMQC | 1.5 mM [U-100% 13C; U-100% 15N] The protein-1, 25 mM sodium phosphate-2, 150 mM sodium chloride-3 | 90% H2O/10% D2O | 0.15 | 6.0 | ambient | 298 | |
| 2 | 3D 1H-15N NOESY | 1.5 mM [U-100% 13C; U-100% 15N] The protein-1, 25 mM sodium phosphate-2, 150 mM sodium chloride-3 | 90% H2O/10% D2O | 0.15 | 6.0 | ambient | 298 | |
| 3 | 3D 1H-13C NOESY | 1.5 mM [U-100% 13C; U-100% 15N] The protein-1, 25 mM sodium phosphate-2, 150 mM sodium chloride-3 | 90% H2O/10% D2O | 0.15 | 6.0 | ambient | 298 | |
| 4 | 2D 1H-1H NOESY | 1.5 mM [U-100% 13C; U-100% 15N] The protein-1, 25 mM sodium phosphate-2, 150 mM sodium chloride-3 | 90% H2O/10% D2O | 0.15 | 6.0 | ambient | 298 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 800 |
| 2 | Varian | INOVA | 900 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | The ensemble was refined using CNS water refinement | CYANA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 12 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure solution | CYANA | 2.2 | Guntert, Mumenthaler and Wuthrich |
| 2 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |














