2M4L
NMR structure of the protein BT_0846 from Bacteroides thetaiotaomicron VPI-5482 (NP_809759.1)
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 4D-HACANH-APSY | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 | |
2 | 5D-HACACONH-APSY | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 | |
3 | 5D-CBCACONH-APSY | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 | |
4 | 2D 1H-15N HSQC | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 | |
5 | 3D 1H-13C NOESY aliphatic | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 | |
6 | 2D 1H-13C HSQC aromatic | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 1.2 mM [U-99% 13C; U-99% 15N] protein, 20 mM sodium phosphate, 50 mM sodium chloride, 5 mM sodium azide | 90% H2O/10% D2O | 0.798 | 6.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.1 | Bruker Biospin |
2 | processing | TopSpin | 3.1 | Bruker Biospin |
3 | chemical shift assignment | CARA | Keller and Wuthrich | |
4 | data analysis | CARA | Keller and Wuthrich | |
5 | structure solution | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
6 | chemical shift assignment | jUNIO | Herrmann, Guntert and Wuthrich | |
7 | structure solution | jUNIO | Herrmann, Guntert and Wuthrich | |
8 | peak picking | jUNIO | Herrmann, Guntert and Wuthrich | |
9 | refinement | OPAL | Luginbuhl, Guntert, Billeter and Wuthrich |