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Solution structure of the SH3 domain of DOCK180
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.4 mM [U-100% 15N] SH3, 50 mM PBS, 1 mM DTT, 1 mM EDTA 90% H2O/10% D2O 6.5 ambient 298 2 3D 1H-15N NOESY 0.4 mM [U-100% 15N] SH3, 50 mM PBS, 1 mM DTT, 1 mM EDTA 90% H2O/10% D2O 6.5 ambient 298 3 2D 1H-15N HSQC 0.4 mM [U-100% 13C; U-100% 15N] SH3, 50 mM PBS, 1 mM DTT, 1 mM EDTA 90% H2O/10% D2O 6.5 ambient 298 4 3D CBCA(CO)NH 0.4 mM [U-100% 13C; U-100% 15N] SH3, 50 mM PBS, 1 mM DTT, 1 mM EDTA 90% H2O/10% D2O 6.5 ambient 298 5 3D HNCACB 0.4 mM [U-100% 13C; U-100% 15N] SH3, 50 mM PBS, 1 mM DTT, 1 mM EDTA 90% H2O/10% D2O 6.5 ambient 298 6 3D HNCO 0.4 mM [U-100% 13C; U-100% 15N] SH3, 50 mM PBS, 1 mM DTT, 1 mM EDTA 90% H2O/10% D2O 6.5 ambient 298 7 2D 1H-13C HSQC 0.4 mM [U-100% 13C; U-100% 15N] SH3, 50 mM PBS, 1 mM [U-100% 2H] DTT, 1 mM EDTA 100% D2O 6.5 ambient 298 8 3D 1H-13C NOESY 0.4 mM [U-100% 13C; U-100% 15N] SH3, 50 mM PBS, 1 mM [U-100% 2H] DTT, 1 mM EDTA 100% D2O 6.5 ambient 298 9 2D 1H-1H NOESY 0.4 mM SH3, 50 mM PBS, 1 mM [U-100% 2H] DTT, 1 mM EDTA 100% D2O 6.5 ambient 298 10 2D 1H-1H TOCSY 0.4 mM SH3, 50 mM PBS, 1 mM [U-100% 2H] DTT, 1 mM EDTA 100% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian VNMRS 600
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with acceptable covalent geometry Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 3 data analysis NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 peak picking Sparky Goddard 5 chemical shift assignment PIPP Garrett 6 structure solution CYANA Guntert, Mumenthaler and Wuthrich