Experiment: 2LXN

Solution NMR structure of glutamine amido transferase subunit of gaunosine monophosphate synthetase from Methanocaldococcus jannaschii

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
2	2D 1H-13C HSQC	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
3	3D HNCA	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
4	3D HN(CO)CA	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
5	3D CBCA(CO)NH	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
6	3D HNCACB	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
7	3D 1H-15N NOESY	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
8	3D 1H-15N TOCSY	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
9	3D HNHA	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
10	3D HCCH-TOCSY	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303
11	3D HCCH-COSY	0.7mM [U-99% 15N] GATase subunit-1, 10% D2O-2, 90% H2O-3, 1mM PMSF-4, 20mM potassium phosphate-5, 0.1mM EDTA-6, 2mM DTT-7, 0.01% sodium azide-8	90% H2O/10% D2O		7.0	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700

NMR Refinement
Method	Details	Software
na		NMRPipe

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (target function)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2	peak picking	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	chemical shift assignment	CCPN		CCPN
4	data analysis	CCPN		CCPN
5	peak picking	CCPN		CCPN
6	structure solution	CCPN		CCPN
7	structure solution	Cyana-3.0		Guntert, Mumenthaler and Wuthrich
8	data analysis	TALOS+		Cornilescu, Delaglio and Bax
9	geometry optimization	TALOS+		Cornilescu, Delaglio and Bax
10	structure solution	TALOS+		Cornilescu, Delaglio and Bax
11	data analysis	Procheck		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton
12	geometry optimization	Procheck		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton
13	structure solution	Procheck		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton
14	data analysis	ProcheckNMR		Laskowski and MacArthur
15	geometry optimization	ProcheckNMR		Laskowski and MacArthur
16	structure solution	ProcheckNMR		Laskowski and MacArthur
17	data analysis	CSI		Canadian Institutes of Health Research (CIHR Group)
18	structure solution	CSI		Canadian Institutes of Health Research (CIHR Group)
19	structure solution	MOLMOL		Koradi, Billeter and Wuthrich
20	data analysis	MOLMOL		Koradi, Billeter and Wuthrich
21	processing	NMR-STAR		Hall, S. R.
22	data analysis	PSVS		Bhattacharya and Montelione
23	structure solution	PSVS		Bhattacharya and Montelione
24	geometry optimization	PSVS		Bhattacharya and Montelione
25	refinement	Cyana-3.0

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

2LXN | pdb_00002lxn

Solution NMR structure of glutamine amido transferase subunit of gaunosine monophosphate synthetase from Methanocaldococcus jannaschii