2LVN
Structure of the gp78 CUE domain
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
2 | 2D 1H-13C HSQC | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
3 | 3D HNCO | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
4 | 3D CBCA(CO)NH | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
5 | 3D C(CO)NH | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
6 | 3D H(CCO)NH | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
7 | 3D HNCACB | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
8 | 2D 1H-13C HSQC aromatic | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 | ||
9 | 3D 1H-15N NOESY | 50 mM TRIS, 50 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | INOVA | 600 |
2 | Bruker | INOVA | 700 |
3 | Varian | INOVA | 600 |
4 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | FINAL STEP IN WATER | Sparky |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | peak picking | Sparky | Goddard | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |