2LTY
NEDD4L WW2 domain in complex with a Smad7 derived peptide
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-100% 13C; U-100% 15N] NEDD4LWW2, 3 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 285 | ||
2 | 2D 1H-1H TOCSY | 1 mM NEDD4LWW2, 2 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 285 | ||
3 | 2D 1H-1H NOESY | 1 mM NEDD4LWW2, 2 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 285 | ||
4 | 3D CBCA(CO)NH | 1 mM [U-100% 13C; U-100% 15N] NEDD4LWW2, 3 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 285 | ||
5 | 3D HNCACB | 1 mM [U-100% 13C; U-100% 15N] NEDD4LWW2, 3 mM SMAD7, 20 mM [U-100% 2H] TRIS, 100 mM sodium chloride | 90% H2O/10% D2O | 7.2 | ambient | 285 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 300 |
Conformers Submitted Total Number | 30 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | peak picking | CARA | Keller and Wuthrich | |
4 | chemical shift assignment | CARA | Keller and Wuthrich | |
5 | structure solution | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
6 | refinement | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read |