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Solution structure of the R3H domain from human Smubp-2 in complex with 2'-deoxyguanosine-5'-monophosphate
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.9 mM [U-99% 15N] Smubp2_R3H, 5.5 mM 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5 % [U-100% 2H] D2O, 10 mM sodium phosphate, 100 mM sodium chloride, 0.03 % sodium azide 95% H2O/5% D2O 0.12 6.3 ambient 298 2 2D 1H-1H TOCSY 0.9 mM [U-99% 15N] Smubp2_R3H, 5.5 mM 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5 % [U-100% 2H] D2O, 10 mM sodium phosphate, 100 mM sodium chloride, 0.03 % sodium azide 95% H2O/5% D2O 0.12 6.3 ambient 298 3 2D 1H-1H NOESY 0.9 mM [U-99% 15N] Smubp2_R3H, 5.5 mM 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5 % [U-100% 2H] D2O, 10 mM sodium phosphate, 100 mM sodium chloride, 0.03 % sodium azide 95% H2O/5% D2O 0.12 6.3 ambient 298 4 3D 1H-15N NOESY 0.9 mM [U-99% 15N] Smubp2_R3H, 5.5 mM 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5 % [U-100% 2H] D2O, 10 mM sodium phosphate, 100 mM sodium chloride, 0.03 % sodium azide 95% H2O/5% D2O 0.12 6.3 ambient 298 5 3D HNHA 0.9 mM [U-99% 15N] Smubp2_R3H, 5.5 mM 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, 5 % [U-100% 2H] D2O, 10 mM sodium phosphate, 100 mM sodium chloride, 0.03 % sodium azide 95% H2O/5% D2O 0.12 6.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing VnmrJ
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection VnmrJ 2.1b Varian 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 chemical shift assignment XEASY Bartels et al. 4 peak picking XEASY Bartels et al. 5 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 6 data analysis CYANA 2.1 Guntert, Mumenthaler and Wuthrich 7 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 8 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich