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NMR structure of major ampullate spidroin 1 N-terminal domain at pH 7.2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.9 mM [U-99% 13C; U-99% 15N] Major ampullate spidroin 1, 20 mM sodium phosphate, 300 mM sodium chloride, 0.03 % sodium azide, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.35 7.2 ambient 298 2 3D CBCA(CO)NH 1.9 mM [U-99% 13C; U-99% 15N] Major ampullate spidroin 1, 20 mM sodium phosphate, 300 mM sodium chloride, 0.03 % sodium azide, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.35 7.2 ambient 298 3 3D HNCA 1.9 mM [U-99% 13C; U-99% 15N] Major ampullate spidroin 1, 20 mM sodium phosphate, 300 mM sodium chloride, 0.03 % sodium azide, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.35 7.2 ambient 298 4 3D 1H-15N NOESY 1.9 mM [U-99% 13C; U-99% 15N] Major ampullate spidroin 1, 20 mM sodium phosphate, 300 mM sodium chloride, 0.03 % sodium azide, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.35 7.2 ambient 298 5 3D 1H-13C NOESY aliphatic 1.9 mM [U-99% 13C; U-99% 15N] Major ampullate spidroin 1, 20 mM sodium phosphate, 300 mM sodium chloride, 0.03 % sodium azide, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.35 7.2 ambient 298 6 3D 1H-13C NOESY aromatic 1.9 mM [U-99% 13C; U-99% 15N] Major ampullate spidroin 1, 20 mM sodium phosphate, 300 mM sodium chloride, 0.03 % sodium azide, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.35 7.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 2 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 collection VnmrJ 2.1b Varian 5 peak picking UNIO 2.0.2 T. Herrmann, F. Fiorito, J. Volk 6 data analysis UNIO 2.0.2 T. Herrmann, F. Fiorito, J. Volk 7 structure solution UNIO 2.0.2 T. Herrmann, F. Fiorito, J. Volk 8 chemical shift assignment CARA 1.9.0 R. Keller 9 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich