2LN8
The solution structure of theromacin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
2 | 3D HNCA | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
3 | 3D HNCO | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
4 | 3D C(CO)NH | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
5 | 3D H(CCO)NH | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
6 | 3D HN(CO)CA | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
7 | 3D HNCACB | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
8 | 3D 1H-15N NOESY | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
9 | 3D 1H-15N TOCSY | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
10 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 | |
11 | 3D 1H-13C NOESY | 1 mM [U-99% 13C; U-99% 15N] protein | 93% H2O/7% D2O | 0.02 | 7.4 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | structure solution | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | processing | NMRView | Johnson, One Moon Scientific | |
5 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
6 | structure solution | NMRView | Johnson, One Moon Scientific | |
7 | processing | CYANA | Guntert, Mumenthaler and Wuthrich | |
8 | chemical shift assignment | CYANA | Guntert, Mumenthaler and Wuthrich | |
9 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
10 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich | |
11 | processing | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
12 | chemical shift assignment | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
13 | structure solution | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
14 | refinement | CNS | Brunger, Adams, Clore, Gros, Nilges and Read |