2LM9
The NMR structure of a major allergen from dust mite
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
2 | 2D DQF-COSY | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
3 | 3D HNCACB | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
4 | 3D CBCA(CO)NH | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
5 | 3D C(CO)NH | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
6 | 3D H(CCO)NH | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
7 | 2D 1H-1H TOCSY | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
8 | 2D 1H-1H NOESY | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
9 | 3D 1H-15N NOESY | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 | ||
10 | 3D 1H-13C NOESY | 0.8 mM sodium phosphate-1 | 95% H2O/5% D2O | 7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Sparky |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | refinement | CNS | BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ |