2LLM
Structure of amyloid precursor protein's transmembrane domain
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
2 | 2D 1H-13C HSQC | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
3 | 3D HNCO | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
4 | 3D HNCA | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
5 | 3D HN(CO)CA | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
6 | 3D HCCH-TOCSY | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
7 | 3D 1H-13C NOESY aliphatic | 0.3-1 mM [U-100% 13C; U-100% 15N] APPjmtm, 21-70 mM [U-100% 2H] DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
8 | 2D 1H-15N HSQC | 0.3-1 mM [U-100% 15N] APPjmtm, 21-70 mM DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
9 | 3D 1H-15N NOESY | 0.3-1 mM [U-100% 15N] APPjmtm, 21-70 mM DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 | |
10 | 3D 1H-15N TOCSY | 0.3-1 mM [U-100% 15N] APPjmtm, 21-70 mM DPC | 95% H2O/5% D2O | 20 | 4.6 | ambient | 318 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
4 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | geometry optimization | MOLMOL | Koradi, Billeter and Wuthrich | |
6 | visualization | MOLMOL | Koradi, Billeter and Wuthrich | |
7 | refinement | TALOS+ | Cornilescu, Delaglio and Bax | |
8 | structure solution | TALOS+ | Cornilescu, Delaglio and Bax | |
9 | chemical shift assignment | CARA | R.L.J.Keller | |
10 | data analysis | CARA | R.L.J.Keller | |
11 | peak picking | CARA | R.L.J.Keller |