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NMR structure of Double-stranded RNA-specific editase Adar
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8-1.2 mM [U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 2 2D 1H-13C HSQC aliphatic 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 3 2D 1H-13C HSQC aromatic 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 4 3D HNCA 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 5 3D HNCACB 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 6 3D CBCA(CO)NH 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 7 3D HCCH-TOCSY 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 8 3D H(CCO)NH 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 9 3D 1H-15N NOESY 0.8-1.2 mM [U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 10 3D 1H-13C NOESY aliphatic 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298 11 3D 1H-13C NOESY aromatic 0.8-1.2 mM [U-13C; U-15N] dADAR-dsRBD1 90% H2O/10% D2O 25 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 600 3 Bruker AVANCE 700 4 Bruker AVANCE 900
NMR Refinement Method Details Software torsion angle dynamics, simulated annealing TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.1 Bruker Biospin 2 processing TopSpin 2.1 Bruker Biospin 3 data analysis Sparky Goddard 4 chemical shift assignment Sparky Goddard 5 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 6 refinement CNS 2.1 Brunger, Adams, Clore, Gros, Nilges and Read 7 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich