☰ Navigation Tabs
Syrian hamster prion protein with thiamine
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.3 mM [U-100% 15N] shPrP, 10 mM thiamine 90% H2O/10% D2O 0.02 6.2 ambient 298 2 3D 1H-15N NOESY 0.3 mM [U-100% 15N] shPrP, 10 mM thiamine 90% H2O/10% D2O 0.02 6.2 ambient 298 3 3D 1H-15N TOCSY 0.3 mM [U-100% 15N] shPrP, 10 mM thiamine 90% H2O/10% D2O 0.02 6.2 ambient 298 4 1D STD-TOCSY 0.5 mM shPrP, 12.5 mM thiamine 90% H2O/10% D2O 0.02 6.2 ambient 298 5 2D NOESY 0.5 mM shPrP, 10 mM thiamine 90% H2O/10% D2O 0.02 6.2 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 800
NMR Refinement Method Details Software simulated annealing NMRDraw
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1 Conformers Submitted Total Number 1 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRDraw 3.0 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 collection VnmrJ Varian 3 chemical shift assignment NMRView Johnson, One Moon Scientific 4 peak picking NMRView Johnson, One Moon Scientific 5 data analysis NMRView Johnson, One Moon Scientific 6 structure solution X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 7 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore