2LG5
NMR structure of Chicken AvBD2 defensin
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H COSY | 0.1 mM Chicken AvBD2 defensin | 90% H2O/10% D2O | 0 | 4.1 | ambient | 293 | |
2 | 2D 1H-1H TOCSY | 0.1 mM Chicken AvBD2 defensin | 90% H2O/10% D2O | 0 | 4.1 | ambient | 293 | |
3 | 2D 1H-1H NOESY | 0.1 mM Chicken AvBD2 defensin | 90% H2O/10% D2O | 0 | 4.1 | ambient | 293 | |
4 | 2D 1H-1H COSY | 0.1 mM Chicken AvBD2 defensin | 100% D2O | 0 | 4.1 | ambient | 293 | |
5 | 2D 1H-1H TOCSY | 0.1 mM Chicken AvBD2 defensin | 100% D2O | 0 | 4.1 | ambient | 293 | |
6 | 2D 1H-1H NOESY | 0.1 mM Chicken AvBD2 defensin | 100% D2O | 0 | 4.1 | ambient | 293 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | ARIA | 1.1 | Linge, O'Donoghue and Nilges |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | refinement | ARIA | 1.1 | Linge, O'Donoghue and Nilges |