2LG0
structure of the duplex containing (5'S)-8,5'-cyclo-2'-deoxyadenosine
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.0 mM DNA (5'-D(*GP*TP*GP*CP*TP*GP*TP*TP*TP*GP*T)-3'), 1.0 mM DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*CP*GP*CP*AP*C)-3') | 100% D2O | 100 | 7.0 | ambient | 303 | |
2 | 2D 1H-1H COSY | 1.0 mM DNA (5'-D(*GP*TP*GP*CP*TP*GP*TP*TP*TP*GP*T)-3'), 1.0 mM DNA (5'-D(*AP*CP*AP*AP*AP*CP*AP*CP*GP*CP*AP*C)-3') | 100% D2O | 100 | 7.0 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | back calculated data agree with experimental NOESY spectrum |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | 10 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm |