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Conformation Effects of Base Modification on the Anticodon Stem-loop of Bacillus subtilis tRNATYR
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 Natural abundance 2D 1H-13C HSQC 2.0 mM i6A,PSU-ASL, 10 mM potassium chloride, 0.02 mM EDTA, 10 mM potassium phosphate 100% D2O 6.3 ambient 298 2 2D 1H-1H NOESY 2.0 mM i6A,PSU-ASL, 10 mM potassium chloride, 0.02 mM EDTA, 10 mM potassium phosphate 100% D2O 6.3 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 500 2 Varian INOVA 600
NMR Refinement Method Details Software simulated annealing Felix
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 50 Conformers Submitted Total Number 8 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 processing Felix Accelrys Software Inc. 2 data analysis Felix Accelrys Software Inc. 3 data analysis Insight II Accelrys Software Inc. 4 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 collection VnmrJ Varian