2LBJ | pdb_00002lbj

Glycyl-tRNA(GCC) anticodon stem-loop from Bacillus subtilis

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC	0.02-0.04 mM [U-98% 13C; U-98% 15N] RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')	100% D2O	10	6.2	ambient	298
2	2D 1H-1H COSY	0.02-0.04 mM [U-98% 13C; U-98% 15N] RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')	100% D2O	10	6.2	ambient	298
3	2D 1H-1H NOESY	0.02-0.04 mM RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')	100% D2O	10	6.2	ambient	298
4	3D 1H-13C NOESY	0.02-0.04 mM [U-98% 13C; U-98% 15N] RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')	100% D2O	10	6.2	ambient	298
5	3D HCCH-TOCSY	0.02-0.04 mM [U-98% 13C; U-98% 15N] RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')	100% D2O	10	6.2	ambient	298
6	2D HCN	0.02-0.04 mM [U-98% 13C; U-98% 15N] RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')	100% D2O	10	6.2	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	500
2	Varian	INOVA	600

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with acceptable covalent geometry
Conformers Calculated Total Number	50
Conformers Submitted Total Number	8
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	chemical shift assignment	Felix		Accelrys Software Inc.
3	processing	Felix		Accelrys Software Inc.
4	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore