2LA1
Expression in Pichia pastoris and backbone dynamics of dendroaspin, a three finger toxin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 3.18 mM H2O-1 | 90% H2O/10% D2O | 4.0 | ambient | 300 | ||
2 | 2D 1H-1H TOCSY | 3.18 mM H2O-1 | 90% H2O/10% D2O | 4.0 | ambient | 300 | ||
3 | 2D 1H-15N HSQC | 1.92 mM [U-98% 15N] H2O-2 | 100% D2O | 4.0 | ambient | 300 | ||
4 | 3D 1H-15N NOESY | 1.92 mM [U-98% 15N] H2O-2 | 100% D2O | 4.0 | ambient | 300 | ||
5 | 3D 1H-15N TOCSY | 1.92 mM [U-98% 15N] H2O-2 | 100% D2O | 4.0 | ambient | 300 | ||
6 | 3D HNHA | 1.92 mM [U-98% 15N] H2O-2 | 100% D2O | 4.0 | ambient | 300 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
DGSA-distance geometry simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | Bruker Biospin | |
2 | peak picking | AURELIA | Neidig, Geyer, Gorler, Antz, Saffrich, Beneicke, Kalbitzer | |
3 | chemical shift assignment | AURELIA | Neidig, Geyer, Gorler, Antz, Saffrich, Beneicke, Kalbitzer | |
4 | refinement | X-PLOR | 3.85 | Brunger |
5 | refinement | X-PLOR NIH |