2L9A
Solution structure of LAK160-P12
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 1mM LAK160-P12; 100mM SDS; 5mM TRIS; 90% H2O/10% D2O | 90% H2O/10% D2O | 100mM | 7 | ambient | 310 | |
2 | 2D 1H-1H NOESY | 1mM LAK160-P12; 100mM SDS; 5mM TRIS; 90% H2O/10% D2O | 90% H2O/10% D2O | 100mM | 7 | ambient | 310 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | Default ARIA refinement in water | Sparky |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | peak picking | Sparky | 3.113 | Goddard |
2 | chemical shift assignment | Sparky | 3.113 | Goddard |
3 | structure solution | CNSSOLVE | 1.21 | Brunger, Adams, Clore, Gros, Nilges and Read |
4 | data analysis | Python | 2.6.5 | Python Software Foundation |
5 | data analysis | ProcheckNMR | 3.5.4 | Laskowski and MacArthur |
6 | structure solution | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
7 | refinement | ARIA | 2.2 | Linge, O'Donoghue and Nilges |
8 | data analysis | AQUA | 3.2 | Rullmann, Doreleijers and Kaptein |
9 | collection | TopSpin | 3.0 | Bruker Biospin |
10 | processing | TopSpin | 3.0 | Bruker Biospin |