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Solution structure of all parallel G-quadruplex formed by the oncogene RET promoter sequence
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.2-3mM potassium phosphate; 90% H2O/10% D2O 90% H2O/10% D2O 0.1 6.8 ambient 298 2 2D 1H-1H TOCSY 0.2-3mM potassium phosphate; 100% D2O 100% D2O 0.1 6.8 ambient 298 3 2D 1H-13C HSQC 0.2-3mM potassium phosphate; 100% D2O 100% D2O 0.1 6.8 ambient 298 4 2D DQF-COSY 0.2-3mM potassium phosphate; 100% D2O 100% D2O 0.1 6.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution X-PLOR NIH 2.17 Schwieters, Kuszewski, Tjandra and Clore 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 refinement X-PLOR NIH 2.17 Schwieters, Kuszewski, Tjandra and Clore