2L4Q
Solution Structures of Oxidized and Reduced Thioredoxin C from M. tb
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
2 | 3D CBCA(CO)NH | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
3 | 3D C(CO)NH | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
4 | 3D HNCO | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
5 | 3D HNCA | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
6 | 3D HNCACB | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
7 | 3D HBHA(CO)NH | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
8 | 3D HN(CO)CA | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
9 | 3D H(CCO)NH | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
10 | 3D HCCH-TOCSY | 50 mM potassium phosphate-2 | 100% D2O | .05 | 6.3 | ambient atm | 298 | |
11 | 3D 1H-15N NOESY | 50 mM potassium phosphate-1 | 90% H2O/10% D2O | .05 | 6.3 | ambient atm | 298 | |
12 | 3D 1H-13C NOESY | 50 mM potassium phosphate-2 | 100% D2O | .05 | 6.3 | ambient atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | Cyana, AMBER | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | NMRView | Johnson, One Moon Scientific | |
5 | chemical shift assignment | Sparky | Goddard | |
6 | data analysis | Sparky | Goddard | |
7 | peak picking | Sparky | Goddard | |
8 | geometry optimization | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
9 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |