2L49
The solution structure of the P2 C,the immunity repressor of the P2 bacteriophage
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
2 | 3D HNCA | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
3 | 3D HNCACB | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
4 | 3D CBCA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
5 | 3D HNCO | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
6 | 3D HCCH-TOCSY | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
7 | 3D 1H-15N NOESY | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
8 | 3D 1H-13C NOESY | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
9 | 3D HBHA(CO)NH | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 | |
10 | 3D HN(CO)CA | 0.6 mM [U-100% 13C; U-100% 15N] entity-1, 10 % D2O-2, 10 mM sodium phosphate-3, 1 mM DTT-4 | 90% H2O/10% D2O | 0 | 6.8 | ambient | 310 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 900 |
2 | Varian | INOVA | 800 |
3 | Bruker | AVANCE | 700 |
4 | Bruker | AVANCE | 500 |
5 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.1 | Guntert, Braun and Wuthrich |
2 | chemical shift assignment | CYANA | 2.1 | Guntert, Braun and Wuthrich |
3 | processing | CYANA | 2.1 | Guntert, Braun and Wuthrich |
4 | chemical shift calculation | CYANA | 2.1 | Guntert, Braun and Wuthrich |
5 | geometry optimization | CYANA | 2.1 | Guntert, Braun and Wuthrich |
6 | structure solution | CYANA | 2.1 | Goddard |
7 | chemical shift assignment | CYANA | 2.1 | Goddard |
8 | processing | CYANA | 2.1 | Goddard |
9 | chemical shift calculation | CYANA | 2.1 | Goddard |
10 | geometry optimization | CYANA | 2.1 | Goddard |
11 | structure solution | CYANA | 2.1 | Bruker Biospin |
12 | chemical shift assignment | CYANA | 2.1 | Bruker Biospin |
13 | processing | CYANA | 2.1 | Bruker Biospin |
14 | chemical shift calculation | CYANA | 2.1 | Bruker Biospin |
15 | geometry optimization | CYANA | 2.1 | Bruker Biospin |
16 | structure solution | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
17 | chemical shift assignment | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
18 | processing | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
19 | chemical shift calculation | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
20 | geometry optimization | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
21 | refinement | CYANA | 2.1 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |