2L1K
Mouse prion protein (121-231) containing the substitutions Y169A, Y225A, and Y226A
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-2H] sodium acetate-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.2 | |
2 | 3D 1H-13C NOESY | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-2H] sodium acetate-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.2 | |
3 | 3D 1H-13C NOESY | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-2H] sodium acetate-2, 0.02 % sodium azide-3 | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.2 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | AVANCE | 900 |
3 | Bruker | DRX | 750 |
4 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 80 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Additional NMR Experimental Information | |
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Details | Two 13C-resolved NOESY experiments were measured with the 13C carrier centered on the aliphatic and the aromatic regions respectively. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | XwinNMR | Bruker Biospin | |
2 | collection | XwinNMR | Bruker Biospin | |
3 | chemical shift assignment | CARA | Keller and Wuthrich | |
4 | data analysis | CARA | Keller and Wuthrich | |
5 | chemical shift assignment | ATNOS/CANDID | 1.2 | Herrmann, Guntert and Wuthrich |
6 | peak picking | ATNOS/CANDID | 1.2 | Herrmann, Guntert and Wuthrich |
7 | structure solution | DYANA | 1.0.3 | Guntert, Mumenthaler and Wuthrich |
8 | refinement | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich | |
9 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich |