2KXF

Solution structure of the first two RRM domains of FBP-interacting repressor (FIR)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D CBCA(CO)NH0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
23D HN(COCA)CB0.3-0.4 mM [U-13C; U-15N; U70%-2H] entity-9, 10 mM TRIS-HCl pH 8.0-10, 50 mM sodium chloride-11, 2 mM TCEP-1290% H2O/10% D2O0.068.0ambient310
33D HNCA0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
43D HNCA0.3-0.4 mM [U-13C; U-15N; U70%-2H] entity-9, 10 mM TRIS-HCl pH 8.0-10, 50 mM sodium chloride-11, 2 mM TCEP-1290% H2O/10% D2O0.068.0ambient310
53D HN(CO)CA0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
63D HNCO0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
73D HNCACB0.3-0.4 mM [U-13C; U-15N; U70%-2H] entity-9, 10 mM TRIS-HCl pH 8.0-10, 50 mM sodium chloride-11, 2 mM TCEP-1290% H2O/10% D2O0.068.0ambient310
83D HNCACB0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
93D HCCH-TOCSY0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
103D 1H-15N TOCSY0.3-0.4 mM [U-15N] entity-1, 10 mM TRIS-HCl pH 8.0-2, 50 mM sodium chloride-3, 2 mM TCEP-490% H2O/10% D2O0.068.0ambient310
113D 1H-13C NOESY0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
123D 1H-13C NOESY optimised for aromatics0.3-0.4 mM [U-13C; U-15N] entity-5, 10 mM TRIS-HCl pH 8.0-6, 50 mM sodium chloride-7, 2 mM TCEP-890% H2O/10% D2O0.068.0ambient310
133D 1H-15N NOESY0.3-0.4 mM [U-15N] entity-1, 10 mM TRIS-HCl pH 8.0-2, 50 mM sodium chloride-3, 2 mM TCEP-490% H2O/10% D2O0.068.0ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA800
2BrukerAVANCE600
3BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisARIA1.2Linge, O'Donoghue and Nilges
2refinementARIA1.2Linge, O'Donoghue and Nilges
3structure solutionARIA1.2Linge, O'Donoghue and Nilges
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5chemical shift assignmentSparkyGoddard
6data analysisSparkyGoddard
7peak pickingSparkyGoddard
8data analysisXEASYBartels et al.