2KX0
the solution structure of UBB+1, frameshift mutant of ubiquitin B
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D CBCA(CO)NH | 1 mM [U-100% 13C] UBB+1-2 | 100% D2O | 150 | 7 | AMBIENT | 298 | |
2 | 3D HNCO | 1 mM [U-100% 13C] UBB+1-2 | 100% D2O | 150 | 7 | AMBIENT | 298 | |
3 | 3D HNCA | 1 mM [U-100% 13C] UBB+1-2 | 100% D2O | 150 | 7 | AMBIENT | 298 | |
4 | 3D HNCACB | 1 mM [U-100% 13C] UBB+1-2 | 100% D2O | 150 | 7 | AMBIENT | 298 | |
5 | 3D HBHA(CO)NH | 1 mM [U-100% 13C] UBB+1-2 | 100% D2O | 150 | 7 | AMBIENT | 298 | |
6 | 3D 1H-15N NOESY | 1 mM [U-99% 15N] UBB+1-1 | 90% H2O/10% D2O | 150 | 7 | AMBIENT | 298 | |
7 | 3D HCCH-TOCSY | 1 mM [U-99% 13C; U-99% 15N] UBB+1-3 | 90% H2O/10% D2O | 150 | 7 | AMBIENT | 298 | |
8 | 3D 1H-13C NOESY | 1 mM [U-99% 13C; U-99% 15N] UBB+1-3 | 90% H2O/10% D2O | 150 | 7 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CYANA | 2.2.5 | P.GUNTERT ET AL. |
2 | structure solution | CYANA | 2.2.5 | P.GUNTERT ET AL. |
3 | chemical shift assignment | CYANA | 2.2.5 | P.GUNTERT ET AL. |
4 | data analysis | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | collection | XwinNMR | Bruker Biospin | |
6 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | peak picking | Sparky | Goddard | |
8 | geometry optimization | ProcheckNMR | Laskowski and MacArthur | |
9 | data analysis | TALOS | Cornilescu, Delaglio and Bax | |
10 | chemical shift assignment | AutoAssign | Zimmerman, Moseley, Kulikowski and Montelione |