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The structure of E-protein activation domain 1 bound to the KIX domain of CBP/p300 elucidates leukemia induction by E2A-PBX1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 2 2D 1H-13C HSQC 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 3 3D CBCA(CO)NH 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 4 3D C(CO)NH 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 5 3D HNCO 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 6 3D HNCACB 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 7 3D HCCH-TOCSY 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 8 3D H(CCO)NH 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 9 3D 1H-13C NOESY 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298 10 3D 1H-15N NOESY 1 mM DSS-1, 20 mM MES-2, 1 mM beta-mercaptoethanol-3 90% H2O/10% D2O 0 6 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing NMRPipe
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe 2.6 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 structure solution CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 3 refinement CNS 1.2 Brunger, Adams, Clore, Gros, Nilges and Read 4 collection TopSpin Bruker Biospin 5 chemical shift assignment NMRView 5.2.2 Johnson, One Moon Scientific 6 data analysis NMRView 5.2.2 Johnson, One Moon Scientific 7 peak picking NMRView 5.2.2 Johnson, One Moon Scientific