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Mesencephalic astrocyte-derived neurotrophic factor (MANF)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-15N NOESY 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 2 3D 1H-13C NOESY 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 3 3D HNCACB 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 4 3D CBCA(CO)NH 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 5 3D HNCA 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 6 3D HN(CO)CA 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 7 3D HCAN 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 8 3D HCA(CO)N 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 9 3D HCCH-TOCSY 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 10 3D HCCH-COSY 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 11 3D H(CCO)NH 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 12 3D C(CO)NH 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 13 2D 1H-15N HSQC 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 14 2D 1H-13C HSQC 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 15 2D (HB)CB(CGCD)HD 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308 16 2D (HB)CB(CGCDCE)HE 1mM [U-98% 13C; U-98% 15N] MANF; 93% H2O/7% D2O 93% H2O/7% D2O 50 6.8 AMBIENT 308
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian UNITY INOVA 600 2 Varian UNITY INOVA 800
NMR Refinement Method Details Software TORSION ANGLE DYNAMICS, simulated annealing, TORSION ANGLE DYNAMICS CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 400 Conformers Submitted Total Number 15 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 automated noe assignment CYANA 2.0.26 P.GUNTERT ET AL. 2 structure solution Amber 8.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 3 refinement Amber 8.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm