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Solution structure of S100A13 with a drug amlexanox
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 2 2D 1H-13C HSQC 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 3 2D 1H-1H NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 4 3D CBCA(CO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 5 3D C(CO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 6 3D HNCO 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 7 3D HNCA 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 8 3D HBHA(CO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 9 3D H(CCO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 10 3D HCCH-TOCSY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 11 3D 1H-15N NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 12 3D 1H-13C NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298 13 3D 13C-filter NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2 90% H2O/10% D2O 0.1 5.6 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 700
NMR Refinement Method Details Software simulated annealing, DGSA-distance geometry simulated annealing,distance geometry,simulated annealing ARIA/CNS ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 18 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution ARIA 2.2 Linge, O'Donoghue, Nilges 2 peak picking ARIA 2.2 Linge, O'Donoghue, Nilges 3 chemical shift assignment Sparky Goddard 4 chemical shift calculation Sparky Goddard 5 collection VnmrJ Varian 6 processing VnmrJ Varian 7 data analysis TALOS Cornilescu, Delaglio and Bax 8 docking the aria calculated protein with ligand (amlexanox) HADDOCK 2.0 Dr. A.M.J.J. Bonvin 9 refinement ARIA 2.2 Linge, O'Donoghue, Nilges