2KMX
Solution structure of the nucleotide binding domain of the human Menkes protein in the ATP-bound form
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.5 mM [U-99% 15N] ATPfree N-MNK-1 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.8 mM [U-95% 13C; U-95% 15N] ATPfree N-MNK-2 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
3 | 2D 1H-1H TOCSY | 1.5 mM [U-99% 15N] ATPfree N-MNK-1 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
4 | 2D 1H-1H NOESY | 1.5 mM [U-99% 15N] ATPfree N-MNK-1 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
5 | 3D HNCO | 0.8 mM [U-95% 13C; U-95% 15N] ATPfree N-MNK-2 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
6 | 3D HNCA | 0.8 mM [U-95% 13C; U-95% 15N] ATPfree N-MNK-2 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
7 | 3D CBCA(CO)NH | 0.8 mM [U-95% 13C; U-95% 15N] ATPfree N-MNK-2 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
8 | 3D HNCACB | 0.8 mM [U-95% 13C; U-95% 15N] ATPfree N-MNK-2 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
9 | 3D 1H-15N NOESY | 1.5 mM [U-99% 15N] ATPfree N-MNK-1 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 | |
10 | 3D 1H-13C NOESY | 0.8 mM [U-95% 13C; U-95% 15N] ATPfree N-MNK-2 | 90% H2O/10% D2O | phospate 0.05 | 7 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 700 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 500 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | chemical shift assignment | CARA | Keller and Wuthrich | |
3 | data analysis | XEASY | Bartels et al. | |
4 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | refinement | Amber | 10 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, Kollm |
6 | data analysis | PSVS | Bhattacharya and Montelione | |
7 | data analysis | ProcheckNMR | Laskowski and MacArthur |