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Aflatoxin Formamidopyrimidine alpha anomer in single strand DNA
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.4 mM (5'-D(*DCP*DTP*(FAG)P*DA)-3')-1 100% D2O 0.1 8.7 ambient 278 2 2D 1H-1H COSY 0.4 mM (5'-D(*DCP*DTP*(FAG)P*DA)-3')-1 100% D2O 0.1 8.7 ambient 278 3 2D 1H-1H NOESY 0.4 mM (5'-D(*DCP*DTP*(FAG)P*DA)-3')-2 90% H2O/10% D2O 0.1 8.7 ambient 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker Advance 500
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria back calculated data agree with experimental NOESY spectrum Conformers Calculated Total Number 8 Conformers Submitted Total Number 8 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 9 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 2 chemical shift assignment Sparky Goddard 3 data analysis Sparky Goddard 4 processing TopSpin Bruker Biospin 5 restraint generation MARDIGRAS Borgias, B.A. & James, T.L. 6 structure validation CORMA James T.L. 7 data analysis Curves Lavery, R. and Sklenar, H