☰ Navigation Tabs
Solution structure of a scFv-IL-1B complex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 200-500 uM [U-15N] IL1B, 200-500 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 2 2D 1H-15N HSQC 600 uM [U-15N] scFv, 600 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313 3 2D 1H-15N HSQC 250 uM [U-15N] IL1B, 250 uM scFv, 4 mg/mL Pf1 phage 90% H2O/10% D2O 150 6.5 ambient 313 4 2D 1H-15N HSQC 250 uM [U-15N] scFv, 250 uM IL1B, 4 mg/mL Pf1 phage 90% H2O/10% D2O 150 6.5 ambient 313 5 3D CBCA(CO)NH 400-700 uM [U-13C; U-15N; U-2H] IL1B, 400-700 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 6 3D CBCA(CO)NH 400-700 uM [U-13C; U-15N; U-2H] scFv, 400-700 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313 7 3D HNCO 400-700 uM [U-13C; U-15N; U-2H] IL1B, 400-700 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 8 3D HNCO 400-700 uM [U-13C; U-15N; U-2H] scFv, 400-700 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313 9 3D HNCA 400-700 uM [U-13C; U-15N; U-2H] IL1B, 400-700 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 10 3D HNCA 400-700 uM [U-13C; U-15N; U-2H] scFv, 400-700 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313 11 3D HNCACB 400-700 uM [U-13C; U-15N; U-2H] IL1B, 400-700 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 12 3D HNCACB 400-700 uM [U-13C; U-15N; U-2H] scFv, 400-700 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313 13 3D CBCA(CO)NH 400-700 uM [U-13C; U-15N; U-2H] IL1B, 400-700 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 14 3D CBCA(CO)NH 400-700 uM [U-13C; U-15N; U-2H] scFv, 400-700 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313 15 3D 1H-15N NOESY 200-500 uM [U-15N] IL1B, 200-500 uM scFv 90% H2O/10% D2O 150 6.5 ambient 313 16 3D 1H-15N NOESY 600 uM [U-15N] scFv, 600 uM IL1B 90% H2O/10% D2O 150 6.5 ambient 313
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker DRX 600
NMR Refinement Method Details Software simulated annealing, molecular dynamics Refined as part of the HADDOCK docking protocol TopSpin
NMR Ensemble Information Conformer Selection Criteria all calculated structures submitted Conformers Calculated Total Number 77 Conformers Submitted Total Number 77 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 2.0 Bruker Biospin 2 processing TopSpin 2.0 Bruker Biospin 3 chemical shift assignment Sparky 3.110 Goddard 4 peak picking Sparky 3.110 Goddard 5 structure solution HADDOCK 2.0 Utrecht University 6 refinement HADDOCK 2.0 Utrecht University