☰ Navigation Tabs
Solution structure of the amino-terminal domain of OmpATb, a pore forming protein from Mycobacterium tuberculosis
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 2 2D 1H-15N HSQC 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 3 3D 1H-15N NOESY 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 4 3D HNCO 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 5 3D HNCA 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 6 3D CBCA(CO)NH 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 7 3D 1H-13C NOESY 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 8 2D 1H-15N HSQC 50 mM sodium phosphate-1 90% H2O/10% D2O 100 6 ambient 300 9 2D 1H-1H NOESY 50 mM sodium phosphate-1 90% H2O/10% D2O 100 ambient 300
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 500 3 Bruker AVANCE 600
NMR Refinement Method Details Software DGSA-distance geometry simulated annealing, minimization Cyana, Amber Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber 8 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm 2 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 3 processing Gifa Delsuc 4 collection XwinNMR Bruker Biospin