2KFO
Mouse Prion Protein (121-231) with Mutation V166A
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-100% 2H] sodium acetate, 0.02 % sodium azide | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.1 | |
2 | 3D 1H-13C NOESY | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-100% 2H] sodium acetate, 0.02 % sodium azide | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.1 | |
3 | 3D HNCA | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-100% 2H] sodium acetate, 0.02 % sodium azide | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.1 | |
4 | 3D CBCA(CO)NH | 1.4 mM [U-99% 13C; U-99% 15N] protein, 10 mM [U-100% 2H] sodium acetate, 0.02 % sodium azide | 90% H2O/10% D2O | 0.01 | 4.5 | ambient | 293.1 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 750 |
3 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CARA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | CARA | Keller and Wuthrich | |
2 | peak picking | ATNOS/CANDID | 1.2 | Herrmann, Guntert and Wuthrich |
3 | chemical shift assignment | ATNOS/CANDID | 1.2 | Herrmann, Guntert and Wuthrich |
4 | structure solution | DYANA | 1.0.3 | Guntert, Mumenthaler and Wuthrich |
5 | refinement | OPALp | Luginbuhl, Guntert, Billeter and Wuthrich | |
6 | data analysis | MOLMOL | Koradi, Billeter and Wuthrich | |
7 | collection | TopSpin | Bruker Biospin | |
8 | processing | TopSpin | Bruker Biospin |