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NMR structure of Plantaricin K in DPC-micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5 90% H2O/10% D2O 0 2.5 ambient 312 2 2D 1H-1H COSY 1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5 90% H2O/10% D2O 0 2.5 ambient 312 3 2D 1H-1H NOESY 1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5 90% H2O/10% D2O 0 2.5 ambient 312 4 2D DQF-COSY 1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5 90% H2O/10% D2O 0 2.5 ambient 312 5 2D 1H-15N HSQC 1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5 90% H2O/10% D2O 0 2.5 ambient 312 6 2D 1H-13C HSQC 1 mM PlnK-1, 170 mM [U-99% 2H] DPC-2, 0.1 % TFA-3, 10 % D2O-4, 0.2 mM DSS-5 90% H2O/10% D2O 0 2.5 ambient 312
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software torsion angle dynamics TopSpin
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 1.3 Bruker Biospin 2 processing TopSpin 1.3 Bruker Biospin 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis Sparky Goddard 5 peak picking Sparky Goddard 6 chemical shift assignment Sparky Goddard 7 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 8 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich 9 data analysis MOLMOL 2k2 Koradi, Billeter and Wuthrich 10 data analysis ACME 2001.006.11.26 Delaglio, Zhengrong and Bax