2KBS
Solution structure of harmonin PDZ2 in complex with the carboxyl tail peptide of cadherin23
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 100mM potassium phosphate-1, 1mM DTT-2, 1mM EDTA-3 | 90% H2O/10% D2O | 0.1 | 6.5 | ambient | 303 | |
2 | 2D 1H-1H NOESY | 100mM potassium phosphate-1, 1mM DTT-2, 1mM EDTA-3 | 90% H2O/10% D2O | 0.1 | 6.5 | ambient | 303 | |
3 | 3D CBCA(CO)NH | 100mM potassium phosphate-1, 1mM DTT-2, 1mM EDTA-3 | 90% H2O/10% D2O | 0.1 | 6.5 | ambient | 303 | |
4 | 3D HNCACB | 100mM potassium phosphate-1, 1mM DTT-2, 1mM EDTA-3 | 90% H2O/10% D2O | 0.1 | 6.5 | ambient | 303 | |
5 | 3D 1H-15N NOESY | 100mM potassium phosphate-1, 1mM DTT-2, 1mM EDTA-3 | 90% H2O/10% D2O | 0.1 | 6.5 | ambient | 303 | |
6 | 3D 1H-13C NOESY | 100mM potassium phosphate-1, 1mM DTT-2, 1mM EDTA-3 | 90% H2O/10% D2O | 0.1 | 6.5 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
2 | chemical shift calculation | CNS | Brunger, Adams, Clore, Gros, Nilges and Read | |
3 | refinement | CNS |