Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
HNE-dG adduct mismatched with dA in basic solution
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
2D 1H-1H NOESY
1.0 mM DNA (5'-D(*DGP*DCP*DTP*DAP*DGP*DCP*DGP*DAP*DGP*DTP*DCP*DC)-3'), 1.0 mM DNA (5'-D(*DGP*DGP*DAP*DCP*DTP*DAP*DGP*DCP*DTP*DAP*DGP*DC)-3'), 1.0 mM (2E,4R)-4-HYDROXYNON-2-ENAL
100% D2O
100
8.9
ambient
288
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
800
NMR Refinement
Method
Details
Software
simulated annealing
Amber
NMR Ensemble Information
Conformer Selection Criteria
back calculated data agree with experimental NOESY spectrum
Conformers Calculated Total Number
10
Conformers Submitted Total Number
1
Representative Model
1 (closest to the average)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
refinement
Amber
Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm